diff --git a/CHANGELOG.md b/CHANGELOG.md
index 0e1968c..3b6e48a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -27,6 +27,7 @@ features and reduced the number of exceptions down to 15 exceptions.
  - Added a new interface class `TemplateInterface` to implement template classes
  - Added new template PhpCliTemplate `phpcli`
  - Added new template PhpLibraryTemplate `phplib`
+ - Added the ability to clean arrays in `\ncc\Utilities > Functions > cleanArray()`
 
 ### Fixed
  - Fixed MITM attack vector in `\ncc\Classes > HttpClient > prepareCurl()`
diff --git a/src/ncc/Managers/ProjectManager.php b/src/ncc/Managers/ProjectManager.php
index d229177..de9859f 100644
--- a/src/ncc/Managers/ProjectManager.php
+++ b/src/ncc/Managers/ProjectManager.php
@@ -40,6 +40,7 @@
     use ncc\Objects\ProjectConfiguration;
     use ncc\Objects\ProjectConfiguration\Compiler;
     use ncc\Utilities\Console;
+    use ncc\Utilities\Functions;
     use ncc\Utilities\Validate;
 
     class ProjectManager
diff --git a/src/ncc/Objects/ProjectConfiguration.php b/src/ncc/Objects/ProjectConfiguration.php
index 10299ae..5b848fa 100644
--- a/src/ncc/Objects/ProjectConfiguration.php
+++ b/src/ncc/Objects/ProjectConfiguration.php
@@ -437,11 +437,14 @@
         {
             if(!$bytecode)
             {
-                Functions::encodeJsonFile($this->toArray($bytecode), $path, Functions::FORCE_ARRAY | Functions::PRETTY | Functions::ESCAPE_UNICODE);
+                Functions::encodeJsonFile(
+                    Functions::cleanArray($this->toArray($bytecode)), $path,
+                    Functions::FORCE_ARRAY | Functions::PRETTY | Functions::ESCAPE_UNICODE
+                );
                 return;
             }
 
-            Functions::encodeJsonFile($this->toArray($bytecode), $path, Functions::FORCE_ARRAY);
+            Functions::encodeJsonFile(Functions::cleanArray($this->toArray($bytecode)), $path, Functions::FORCE_ARRAY);
         }
 
         /**
diff --git a/src/ncc/Utilities/Functions.php b/src/ncc/Utilities/Functions.php
index 68e0ba7..be88b89 100644
--- a/src/ncc/Utilities/Functions.php
+++ b/src/ncc/Utilities/Functions.php
@@ -1058,4 +1058,23 @@
             RuntimeCache::set('posix_isatty', posix_isatty(STDOUT));
             return (bool)RuntimeCache::get('posix_isatty');
         }
+
+        /**
+         * Cleans an array by removing empty values
+         *
+         * @param array $input
+         * @return array
+         */
+        public static function cleanArray(array $input): array
+        {
+            foreach ($input as $key => $value)
+            {
+                if (is_array($value) && ($input[$key] = self::cleanArray($value)) === [])
+                {
+                    unset($input[$key]);
+                }
+            }
+            return $input;
+        }
+
     }
\ No newline at end of file